Tutorials

On the following pages, we show several tutorials for the usage of easyPheno - often supported by videos.

• HowTo: Run easyPheno using Docker
  • Workflow
  • Video tutorial: Run easyPheno with Docker
• HowTo: Use easyPheno as a pip package
  • Installation, imports and paths
  • Run whole optimization pipeline at once
  • Single elements of the optimization pipeline
  • Further information
• HowTo: Summarize prediction results with easyPheno
  • Additional analysis for simulated phenotypes
• Advanced Topics
  • Code walkthrough video
  • HowTo: Adjust existing prediction models and their hyperparameters
    • Adjust prediction model
    • Adjust hyperparameters
  • HowTo: Integrate your own prediction model
    • Overview
    • An example: Integrating k-nearest-neighbors
    • Video tutorial: Integrate new model
  • HowTo: Reuse optimized model
    • Run inference on new data
    • Retrain on new data